PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03662.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 260aa    MW: 28628.5 Da    PI: 9.6947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03662.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-1383128454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Zmw_sc03662.1.g00060.1.es.mkhc  83 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 128
                                     799***********************6.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.3979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1982153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1282132No hitNo description
PfamPF000101.2E-1083128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1983150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-1685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEATSRASNT NLHPAATANE GMLSFSSAPT TRPAKSESDH SDLDASVREV ESSRVVAPPP  60
PEAEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS KMDKASLLGD  120
AISYINELRG KLTALESDKE TMQSQIEALK KERDARPAPQ AGGFGHDAGP RCHAVEIDAK  180
ILGLEAMIRV QCHKRNHPSA RLMTALRELD LDVCHASVSV VKDLMIQQVA VKMASRIYSQ  240
DQLNAVLYSR LAEPGSVVGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00085PBMTransfer from AT5G46760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698381.11e-167PREDICTED: LOW QUALITY PROTEIN: transcription factor MYC4-like
SwissprotQ336P51e-157MYC2_ORYSJ; Transcription factor MYC2
TrEMBLK4AM381e-167K4AM38_SETIT; Uncharacterized protein
STRINGSi039973m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157